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WASHINGTON — Despite denouncing the CIA’s drone campaign, top officials in Pakistan’s government have for years secretly endorsed the program and routinely received classified briefings on strikes and casualty counts, according to top-secret CIA documents and Pakistani diplomatic memos.

The files describe dozens of drone attacks in Pakistan’s tribal region and include maps as well as before-and-after aerial photos of targeted compounds over a four-year stretch from 2008 to 2011 in which the campaign intensified dramatically.

Markings on the documents indicate that many of them were prepared by the CIA’s Counterterrorism Center to be shared with Pakistan’s government. They tout the success of strikes that killed dozens of alleged al-Qaeda operatives and assert repeatedly that no civilians were harmed.

Pakistan’s tacit approval of the drone program has been one of the more poorly kept national security secrets in Washington and Islamabad. Early in the campaign, the CIA even used Pakistani airstrips for its Predator fleet.

But the files expose the explicit nature of a secret arrangement struck between the two countries at a time when neither was willing to publicly acknowledge the existence of the drone program. The documents detailed at least 65 strikes in Pakistan and were described as “talking points” for CIA briefings, which occurred with such regularity that they became a matter of diplomatic routine. The documents are marked “top secret” but cleared for release to Pakistan.

A spokesman for the Pakistani Embassy in Washington did not respond to a request for comment. A CIA spokesman declined to discuss the documents but did not dispute their authenticity.

The files serve as a detailed timeline of the CIA drone program, tracing its evolution from a campaign aimed at a relatively short list of senior al-Qaeda operatives to a broader aerial assault against militant groups.

The records also expose the distrust and dysfunction that has afflicted U.S.-Pakistani relations.

Some files describe tense meetings in which senior U.S. officials, including then-Secretary of State Hillary Rodham Clinton, confront their Pakistani counterparts with U.S. intelligence purporting to show Pakistan’s ties to militant groups involved in attacks on American forces, a charge that Islamabad has consistently denied.

In one case, Clinton cited “cell phones and written material from dead bodies that point all fingers” at a militant group based in Pakistan, according to a diplomatic cable dated Sept. 20, 2011. “The U.S. had intelligence proving ISI was involved with these groups,” the cable said, referring to Pakistan’s Inter-Services Intelligence agency.

A 2010 memo sent by Pakistan’s Ministry of Foreign Affairs to its embassy in Washington outlined a plan to undermine the CIA.

“Kindly find enclosed a list of 36 U.S. citizens who are [believed] to be CIA special agents and would be visiting Pakistan for some special task,” said the memo, signed by an official listed as the country’s director general for Americas. “Kindly do not repeat not issue visas to the same.”

The earliest of the files describes 15 strikes from December 2007 through September 2008. All but two of the entries identify specific al-Qaeda figures as targets.

The campaign has since killed as many as 3,000 people, including thousands of militants and hundreds of civilians, according to independent estimates.

Several documents refer to a direct Pakistani role in the selection of targets. A 2010 entry, for example, describes hitting a location “at the request of your government.” Another from that same year refers to a “network of locations associated with a joint CIA-ISI targeting effort.”

The files also contain fragments of code words, including SYL-MAG, an abbreviation of Sylvan Magnolia, that correspond to drone operations. The code word was later changed to Arbor-Hawthorn.

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